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Spatial epidemiology of an H3N2 swine influenza outbreak.

Identifieur interne : 000757 ( Main/Exploration ); précédent : 000756; suivant : 000758

Spatial epidemiology of an H3N2 swine influenza outbreak.

Auteurs : Tim Pasma [Canada]

Source :

RBID : pubmed:18309747

Descripteurs français

English descriptors

Abstract

The H3N2 swine influenza virus appeared for the 1st time in the province of Manitoba during the fall of 2004. The purpose of this study was to characterize how swine influenza moved through the province in time and space, and to determine if there are any significant patterns associated with this movement. Herds with outbreaks of H3N2 swine influenza were located by using a Geographic Information System and analyzed by using spatial analysis software. Descriptive and spatial statistics, including the Nearest Neighbor Index, Cuzick and Edwards' test, Spatial Scan statistic, k Nearest Neighbor test, Knox's test, and Mantel's test, were used to analyze the outbreak. There was clustering of the outbreak in the region surrounding Steinbach, Manitoba, an area that is densely populated with swine. It is hypothesized that density of swine farms was a factor in the clustering and movement of this swine influenza outbreak.

PubMed: 18309747


Affiliations:


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Le document en format XML

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<Citation>Avian Dis. 2003;47(3 Suppl):1010-4</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">14575103</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Biometrics. 1983 Jun;39(2):361-71</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">6626662</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2006 Jul;12(7):1132-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">16836834</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Prev Vet Med. 2002 Dec 30;56(3):215-26</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12441237</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Appl Microbiol. 1999 Aug;87(2):196-9</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10475947</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Clin Infect Dis. 2003 Oct 15;37(8):1094-101</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">14523774</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2003 Jun;9(6):641-6</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">12781002</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Appl Microbiol. 1999 Aug;87(2):294-7</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10475972</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Stat Med. 2001 Oct 15;20(19):2977-87</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">11568953</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>J Virol. 2000 Sep;74(18):8243-51</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10954521</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Prev Vet Med. 2000 Jun 12;45(3-4):257-84</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">10821965</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Stat Med. 1996 Sep 15-30;15(17-18):1935-49</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8888486</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Soc Sci Med. 1996 Mar;42(6):843-55</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">8778997</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Am J Respir Crit Care Med. 1995 Oct;152(4 Pt 2):S25-30</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">7551408</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Stat Med. 1995 Apr 30;14(8):799-810</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">7644860</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Emerg Infect Dis. 2004 Dec;10(12):2156-60</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">15663853</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
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